PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3550V3.5.p
Common NamePHYPADRAFT_229274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 390aa    MW: 41757.4 Da    PI: 9.7243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3550V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.5e-06344366325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++ C +f+ +  C+ G++C F H
  Pp3c5_3550V3.5.p 344 RKACIYFSTSRGCRNGSSCAFLH 366
                       678******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343341369IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4344366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4345367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MPVKPRTWFP VAPLENNNLS LPAHTTPAYG PPVTVNRNII PPNGTVVQTT NMSNARTGSL  60
GLPVRAAEGG TEPDVPAAAA AAYAALQQSN DTTMIDRELL IKFLTNPSML QSLSEKLAQN  120
PPGNYGVVNR RIPESVDHSG IGARGNGRVW NPTVTEHAKS GQRHLETAVG ITDPHMRHGY  180
DRPPGFGAPS GANALGQAPP QPGQGYAHPG PLTIQSLPLP NMPPPTSVGY DQSIVSGSGR  240
PISQRDEQYY KDLISQHGKN EEDIWGAIGV PETGNSYPGG GRPRASGLDR EKRLGSAERT  300
ERPERTDSRA RWAGREDVDM AGLSIRQGDG DQANRSGQSR GKSRKACIYF STSRGCRNGS  360
SCAFLHETNN AERAKRPKLE GKESNIGYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001764994.10.0predicted protein
TrEMBLA9SFA90.0A9SFA9_PHYPA; Predicted protein
STRINGPP1S72_333V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]